MANOR: Micro-Array NORmalization of array-CGH data

Pierre Neuvial $^{\rm ~1}$ , Philippe Hupé $^{\rm ~1,2}$ , Isabel Brito $^{\rm ~1}$ , Emmanuel Barillot $^{\rm ~1}$

1. Service Bioinformatique, Institut Curie, 26, rue d'Ulm, Paris, 75248 cedex 05, France
2. UMR 144 CNRS/Institut Curie, 26, rue d'Ulm, Paris, 75248 cedex 05, France
manor@curie.fr

Contents
1 Overview
2 arrayCGH class
3 flag class
- 3.1 Attributes
  - 3.1.1 Exclusion and correction flags
    - exclusion flags
    - correction flags
  - 3.1.2 Permanent and temporary flags
- 3.2 Methods
4 qscore class
- 4.1 Attributes
- 4.2 Methods
5 Data
- 5.1 edge
- 5.2 gradient
6 Graphical representations
- 6.1 genome.plot
- 6.2 report.plot
7 Sample MANOR sessions
- 7.1 array edge
- 7.2 array gradient
8 Session information
9 Supplementary data
Bibliography
About this document ...

Pierre Neuvial 2007-03-16